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    Research Newsletter | Summer 2023

    Announcements

    Penn Has a New Data Repository

    Dryad is an open access generalist repository for STEM related data. It is a great option for data that does not fit into a disciplinary repository and does not need to have controlled access. Dryad supports your data sharing by providing persistent, unique identifiers (DOI’s), offering a permissible license for widespread use, linking datasets to related research outputs, and allowing the option to keep the dataset private for a related articles peer review period. The University of Pennsylvania’s membership covers fees for dataset deposits of up to 300GB, but Dryad can take up to 1TB of data per deposit (all data over 300GB incurs fees for the depositing researcher).

    Dryad is a fully curated repository, where all datasets undergo curation to check for usability and thorough metadata. Dryad’s team of skilled data curators reach out to depositors once a dataset is reviewed with feedback to improve usability and documentation for future users.

    You can reach out to the Penn Libraries Research Data & Digital Scholarship team at LibraryRDDS@pobox.upenn.edu for more information. They can help you identify an appropriate repository for your data. Check out their Data Management Resources Guide as well for more related information.

    Free Unlimited Cloud Storage for Zotero Users

    For University of Pennsylvania community members who use Zotero for citation management, file storage is about to get easier. The Penn Libraries have subscribed to Zotero Institution, which provides free, unlimited cloud storage for all current students, faculty, and staff.

    Current Zotero users should add their Penn-affiliated email address at https://www.zotero.org/settings/account under “Manage Email Addresses.” Zotero will automatically update the account storage to unlimited. Any users who manage their Zotero account with a personal email address can simply add their Penn-affiliated email as an additional address on the account.

    New users should simply register for a free account (using a personal email, if they want to continue use after their time at Penn), and then add their Penn-affiliated email address as explained above.

    Already paying for individual storage? Once Zotero Institution is activated with a Penn-affiliated email address, Zotero will automatically set individual storage plans to not renew. Upon graduation, students can reactivate their individual storage plans.

    Detailed instructions and a complete FAQ can be found on the Penn Libraries Zotero Guide

    Upcoming Data Workshops

    Data Repository Petting Zoo

    Thursday, July 20, 2023, 2:00 p.m.—3:00 p.m.

    Research Data & Digital Scholarship in conjunction with the Research Services Council invites you to the data repository petting zoo! The Penn Libraries provides access to several data repositories. Come learn about finding and accessing data in four of data repositories: ICPSR, Dryad, Qualitative Data Repository, and ScholarlyCommons. Presented by Lauren Phegley, Lynda Kellam, and Jo Thompson, they will demonstrate ways to find and access data, highlighting things to consider in each source. These are great resources for finding teaching datasets, supporting data reference questions, and investigating UPenn scholarly outputs.

    Complying with the NIH Data Management & Sharing Policy

    Thursday, September 7, 2023, 11:00 a.m.—12:00 p.m.

    This workshop will provide information and guidance for researchers on the new National Institute of Health (NIH) Data Management & Sharing Policy implemented on January 25, 2023. Since the University of Pennsylvania is a major recipient of NIH funding, it is vital that UPenn researchers are aware of this upcoming change and know how to comply. After this workshop, learners will be able to understand the purposes of the new policy, judge when the policy applies, define the six elements of the Data Management & Sharing Plan, and identify compliance expectations.

    Using DMPTool to Write a Data Management Plan (DMP) Workshop

    Thursday, September 14, 2023, 11:00 a.m.—12:00 p.m.

    This workshop teaches researchers how to approach writing a data management plan (DMP). After this session, learners will understand the basic requirements of a DMP, understand how to utilize DMPTool to streamline their DMP writing, and recognize on campus data management support.

    The main audience for this session is researchers who are writing a DMP for a grant proposal, but those who are interested in writing a DMP for project management purposes, such as for lab or team environments, and not for a grant submission are encourage to join. This session is discipline agnostic and applies to all researchers.

    Dryad for STEM Researchers

    Thursday, September 21, 2023, 11:00 a.m.—12:00 p.m.

    This workshop will introduce researchers to Dryad, a generalist data repository for STEM research data. This workshop will go through how to get signed up with Dryad, how to deposit research data, and how can increase your ability to comply with data sharing requirements. While this workshop will be most suitable for STEM researchers and those supporting them, anyone is welcome to join.

    Ongoing Interest Groups

    PUG@Penn (Python Users Group)

    Next meeting: Thursday, September 7, 2023, 12:00 p.m.—1:00 p.m.

    PUG@Penn (Python Users Group) brings together members of the Penn community interested in or already working with the popular open-source programming language Python. This drop-in, informal, collaboratively-oriented group meets once per month to experiment and explore the many uses for Python across academic disciplines and industries. All are welcome – no prior experience with Python required! Whether you’re looking to get started on a new project, troubleshoot a current one, or discuss and learn about useful Python tools, applications, and libraries, you will find support and community in PUG@Penn.

    RPenn Group

    Next meeting: Thursday, September 14, 2023, 12:00 p.m.—1:00 p.m. 

    The R Penn Group (RPG) presented by the Research Data & Digital Scholarship team at Penn Libraries is an initiative that meets to discuss, learn, and collaborate on topics and projects related to statistics, mapping, data wrangling, visualization, and analysis with R programming language through community focused problem solving. We look forward to seeing you there! All skill levels are welcome.s on animal handling and manipulations, please contact the ULAR Scientist Training staff at ular-tr@pobox.upenn.edu. This resource team can also provide specialized training on aspects of injections and blood collection methods, micro-tattooing, rodent identification, catheterization, anesthesia, aseptic technique, and surgical practices, as well as humane refinements in handling procedures.

    Andrew J. Modzelewski, BSc, PhD, or “Dr. Modz” as he is affectionately known, is an assistant professor in the Department of Biomedical Sciences who was recruited to Penn Vet last year. Dr. Modz received his BSc from Penn State University with a major in Biochemistry and Molecular Biology. During this time, under the mentorship of Dr. John Golbeck, he developed an interest in biophysics, technology development, and understanding basic mechanisms. Dr. Modz then went to Cornell University for his PhD in Genetics, Genomics and Development. Under the mentorship of Dr. Paula Cohen, Dr. Modz uncovered an unexpected nuclear role for RNAi in sex chromosome inactivation mouse oogenesis and spermatogenesis. It was during his time at Cornell that he developed an interest in reproduction and early embryonic development. Dr. Modz then moved to the University of California at Berkeley for his postdoctoral research in the lab of Dr. Lin He, an expert on miRNAs and cancer.

    As a postdoc, Dr. Modz pivoted from his mentor’s major research to investigate a different kind of non-coding RNA in the context of early development. Dr. Modz modified and developed various tools to study the phenomenon of retrotransposon reactivation that occurs in all mammalian preimplantation embryos. One of these tools is an electroporation-based CRISPR/Cas9 delivery system called “CRISPR RNP Electroporation of Zygotes” (CRISPR-EZ). This tool is quick, easy, and importantly very affordable and outperforms the gold standard technique of microinjection in most zygote related manipulation techniques. In collaboration, Dr. Modz helped develop a single cell/embryo Western Blot-based technique called Tri-Blot that can measure DNA, RNA, and Protein for the same single cell. Dr. Modz used these tools to study one of the many potential mechanisms of retrotransposons. Despite being called “Junk DNA” or “Selfish DNA,” Dr. Modz challenged the long standing “Us vs. Them” model that describes retrotransposons as parasites and mammalian genomes as hosts, and published evidence of the first essential retrotransposon in mammalian preimplantation development, suggesting instead a “symbiotic” relationship. After completing his postdoctoral training, Dr. Modz combined his background and training to further study the role of retrotransposon reactivation in development and extend this to instances of epigenetic breakdown that occur in aging, disease, and cancer, where retrotransposons frequently re-emerge and potentially contribute to the success of the malignancy. 

    This First Essential Retrotransposon

    Approximately 50% of mammalian genomes originate from retrotransposons while only ~2% is associated with protein coding genes. Retrotransposons are effective at colonizing genomes, through hijacking cellular machineries to spread their own genomes using a ‘copy and paste’ mechanism for expansion. Over millions of years of co-evolution, most retrotransposons have been inactivated through mutation. Still, many retain regulatory and structural features that can influence nearby genes in cancer, immunity, and aging cells. While silenced in healthy adult tissues, retrotransposon reactivation is essential in preimplantation embryos, as disruption of their expression results in embryonic lethality, but the reason for this is unknown. The repetitive nature of retrotransposons makes studying individual functions difficult, however comparative analysis of eight publicly available mammalian preimplantation RNA-SEQ datasets revealed strikingly similar levels of dynamic retrotransposon family expression that are active during defined windows of time, sometimes spanning a single cell division. A subset of these splice with nearby protein coding genes, forming hundreds of novel embryo and species-specific promoters, exons, and polyA sites, called “Chimeric Transcripts.” Using CRISPR-EZ, Dr. Modz generated five retrotransposon deletions mouse lines, essentially restoring the genomes to a “pre-integration” ancestral state. 

    One retrotransposon deletion mouse line was fully characterized and revealed at least one essential function for retrotransposons. A mouse-specific retrotransposon called MT2B2 acts as a promoter to transiently drive a truncated Cdk2ap1 isoform (Cdk2ap1ΔN) that promotes proliferation just prior to implantation. In contrast, the canonical Cdk2ap1 represses cell proliferation but expresses after implanting. The MT2B2 promoter is essential, where deletion induces maternal and pup lethality in part by reduction of cell proliferation, impaired implantation, uterine crowding, and implantation into unsuitable uterine sites, reminiscent of the human pregnancy complication placenta previa. Surprisingly, Cdk2ap1ΔN is evolutionarily conserved in sequence and function, yet is driven by different retrotransposons promoters across mammals in an unusual case of convergent evolution. The distinct Cdk2ap1ΔN expression strongly correlates with the duration of preimplantation in each species. Hence, retrotransposon reactivation is an aspect of normal biology, where species-specific transposon promoters can yield evolutionarily conserved protein isoforms, bestowing novel functions and species-specific expression to govern essential biological processes. 

    Current efforts in the lab are based on characterizing the remaining retrotransposon deletion mouse lines that display developmental defects spanning fertility, global translation, and regulation of totipotency and pluripotency. The lab is also engaged on technology development and expanding the utility of CRISPR-EZ for more sophisticated genome editing strategies. Collectively, these efforts are aimed at developing a comprehensive atlas of retrotransposon functions and mechanisms to better understand and appreciate the complex nature of developmental biology. 

    Looking Forward

    As the Modz Lab grows, Andrew aims to use the power of comparative biology to expand his studies to other species including humans using embryonic stem cells and novel “synthetic embryo” technologies that are rapidly emerging. Ultimately, the Modz Lab is interested in understanding the various retrotransposon-based mechanisms that exist in the developing embryo (where reactivation is intentional and essential) and apply this knowledge to instances where dysregulation of retrotransposons occur, where reactivation is instead spontaneous and contributes to the survival and success of the disease at the expense of the individual.     

    References: 

    Modzelewski, A. J., Chen, S., Willis, B. J., Lloyd, K. C. K., Wood, J. A., & He, L. (2018). Efficient mouse genome engineering by CRISPR-EZ technology. Nature Protocols, 13(6). 

    Diallo, C. K., Modzelewski, A. J. Efficient Genome Editing of Mice by CRISPR Electroporation of Zygotes. J. Vis. Exp. (190), e64302, doi:10.3791/64302 (2022).

    Modzelewski, A. J., Gan Chong, J., Wang, T., & He, L. (2022). Mammalian genome innovation through transposon domestication. Nature Cell Biology 2022, 1–9. 

    Modzelewski, A. J., Shao, W., Chen, J., Lee, A., Qi, X., Noon, M., Tjokro, K., Sales, G., Biton, A., Anand, A., Speed, T. P., Xuan, Z., Wang, T., Risso, D., & He, L. (2021). A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development. Cell, 184(22), 5541-5558.e22. 

    Rosàs-Canyelles, E., Modzelewski, A. J., Geldert, A., He, L., & Herr, A. E. (2021). Multimodal detection of protein isoforms and nucleic acids from mouse pre-implantation embryos. Nature Protocols, 16(2), 1062–1088.

    Latest Research

    Highlighted News

    The immune system does battle in the intestines to keep bacteria in check (link is external)

    New research from Penn Vet demonstrates that Yersinia pseudotuberculosis, a relative of the bacterial pathogen that causes plague, triggers the body’s immune system to form lesions in the intestines called…

    Cross-disciplinary collaboration for a healthier planet (link is external)

    The Environmental Innovations Initiative announces a third round of funded research communities to catalyze interdisciplinary research at Penn, investigating issues from regenerative agriculture to project-based learning for global climate justice.

    From outbreaks to breakthroughs: Tackling infectious and zoonotic diseases (link is external)

    Three years into what feels like a never-ending pandemic, science news has become more than an afterthought to many; it’s a ring buoy for those drowning in a sea of…

    Penn Vet’s Student Research Day was held on Friday, March 17, 2023, in the Vernon and Shirley Hill Pavilion. The organizing committee was led by Dr. Jennifer Punt and included faculty members Elizabeth Lennon, Michael May, Elizabeth Woodward, and Phillip Scott, and members of the Student Research Club, Nimisha Pattada and Stephanie Sila.

    Dean Andrew Hoffman kicked off the day’s events with an introduction that drew upon four thought-provoking books dealing with the topics of curiosity, the geography of great leaps forward, different types of intelligence, and some of the positive aspects of stress and anxiety. Seven students delivered oral presentations (Rebecca Brisman, Katherine Morucci, Nimisha Pattada, Rachel Tevere, Jaclyn Carlson, Elisabeth Lemmon, and Martha Stone), and 30 posters were presented. Elaine Ostrander, PhD, Chief and Distinguished Investigator, Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, delivered a fascinating keynote presentation entitled Genetics of Cancer, Morphology and Aging in Dogs.

    Academic prizes were awarded for three poster presentations (Andrew Dunlap, Philip Hicks, and Corisa Quincey), and all seven student oral presentations. This year’s academic prizes for oral and poster presentations were named for Professor Emeritus Richard O. Davies. Faculty judges for the abstracts and posters included Drs. Matthew Atherton, Elizabeth Lennon, Frank Luca, Michael May, Jennifer Punt, and Elizabeth Woodward.

    Student Research Day also included a ‘poster slam’ competition. Each poster presenter provided a one-minute video and a single slide to introduce their poster. These introductions were compiled into a video that played on a loop in the Billhardt Auditorium during the poster session. Prizes were awarded in three categories: Clear, Creative, and Crowd Favorite. Winners were chosen by popular vote and included Jessica DiStefano (Clear category); Kate Marciano (Creative category); and Corisa Quincey (Crowd Favorite category).

    Student Research Day presentations and photos are available for online viewing.

    Charles-Antoine “Charley” Assenmacher, DVM, MSc, DACVP, is an Assistant Professor of Comparative Pathology at the Comparative Pathology Core in the Department of Pathobiology. After completing his DVM in 2012 at the University of Liege, Belgium, he went on to do two small animal rotating internships. The first one in the same institution, combined with a Master of Science, and the second one at the Animal Health Trust in the United Kingdom. He then moved to the US to start the Veterinary Anatomic Pathology Residency program at the University of Pennsylvania, which he completed in 2018. Fresh out of residency, and with a strong interest in research pathology, Dr. Assenmacher joined the Comparative Pathology Core (CPC) in 2018, first as a fellow/lecturer, then as a Senior Research Investigator, and finally transitioned to a Faculty position in the summer of 2022. Dr. Assenmacher is the Technical Director of the CPC and is in charge of the Digital Pathology service along with his other duties at the core. In addition to his responsibilities at the CPC, Dr. Assenmacher is also in charge of the ocular pathology diagnostic service at the PVDL and supervises the Anatomic Pathology residents during their autopsy rotations.


    Matthew “Matt” Atherton, BVSc, PhD, DECVIM-CA (Oncology), is an Assistant Professor of Immuno-Oncology, with dual appointments in the Departments of Biomedical Sciences and Clinical Sciences and Advanced Medicine. He completed veterinary school at the University of Bristol. Following three years in mixed practice, Dr. Atherton undertook a rotating internship at the Royal Veterinary College. He gained board certification in medical oncology following residency training at the University of Glasgow and was awarded Master of Veterinary Medicine for researching the canine serum proteome in canine lymphoma. Subsequently, he defended his PhD at McMaster University with data from this research enabling “first-in-man” oncolytic virotherapy trials for epithelial malignancies. Dr. Atherton completed post-doctoral training at McMaster and the University of Pennsylvania where he studied novel approaches to cancer immunotherapy prior to starting a comparative oncology lab at Penn Vet in November 2022. The primary focus of the Atherton Lab is dissecting the interplay between the immune system and cancer with a goal of developing next generation adoptive T cell therapies for hematologic malignancies utilizing a One Health approach. As a clinician scientist Matt enjoys seeing general medical oncology patients and is a member of the Comprehensive Care Team at the Ryan Veterinary Hospital where research generated in the lab is used to inform clinical trials for veterinary cancer patients.


    Leonardo Brito, DVM, PhD, DACT, is an Assistant Professor of Large Animal Reproduction in the Department of Clinical Studies—New Bolton Center. He obtained his DVM in 1997 from the Universidade Federal de Uberlândia (Brazil), and completed his PhD in Animal Reproduction (Theriogenology) at the University of Saskatchewan (Canada) in 2006. His research and clinical interests include abnormal spermatogenesis, sperm morphology, semen analysis, and quality assurance in andrology laboratories.


    Ana C. Castejon Gonzalez, DVM, PhD, DAVDC, is an Assistant Professor of Dentistry and Oral Surgery in the Department of Clinical Sciences and Advanced Medicine. She completed her DVM (2001) and PhD (2005) at the Universidad Complutense de Madrid (Spain). She joined Penn Vet in 2014, became a Diplomate of the American Veterinary Dental College (AVDC) in 2017, and Fellow in Oral and Maxillofacial Surgery (AVDC-OMFS) in 2022. Her current research focuses on management of maxillofacial trauma and congenital and acquired palate defects.


    Erin Gibson, DVM, DACVS-SA, Assistant Professor of Minimally Invasive Surgery, earned her DVM from the University of California-Davis in 2016. Her research interests include minimally invasive surgery (e.g., laparoscopy/thoracoscopy) and identifying/evaluating novel devices or approaches that may optimize minimally invasive surgical outcomes in patients. She is also interested in interventional radiology, including intravascular interventions, tumor embolization, and interventional treatment of upper and lower urinary tract disease.


    Louise Moncla, PhD, Assistant Professor of Pathobiology, received her PhD in Microbiology from the University of Wisconsin-Madison in 2017. Before coming to Penn Vet, she completed a postdoctoral research fellowship at Fred Hutchinson Cancer Center. Her research focuses on how viruses emerge in human populations and transmit between them, and uses tools from phylodynamics, virology, and population genetics to understand how viruses evolve within individuals, between populations, and across continents. 


    Kathleen “Katie” Mulka, DVM, PhD, DACVP, is an Assistant Professor of Anatomic Pathology in the Department of Pathobiology. She earned her DVM at Michigan State University in 2017. Following veterinary school, she completed a residency in Comparative Pathology (2021) and a PhD in Pathobiology (2023) at Johns Hopkins University School of Medicine in the Department of Molecular and Comparative Pathobiology. Her PhD focused on examination of changes in gene expression in the spinal cord of SIV-infected macaques using bulk and single nucleus RNA sequencing. She also helped to characterize the pathology of SARS-CoV-2 and influenza infection in multiple rodent models. Her research interests include diagnostic pathology, molecular and digital pathology, and comparative pathogenesis of viral disease.


    Kevin Niedringhaus, BVetMed, PhD, DACVP, is an Assistant Professor of Wildlife Pathology with Penn Vet’s Wildlife Futures Program based at New Bolton Center. He received his BS in Wildlife and Fisheries Biology from Clemson University (2008) and his veterinary degree (BVetMed) from the Royal Veterinary College, University of London (2014). Afterwards, he spent five years at the University of Georgia aiding in wildlife disease diagnostics while obtaining his PhD in Comparative Biomedical Sciences (2019). Dr. Niedringhaus completed a residency in Veterinary Anatomic Pathology at the University of California-Davis and the San Diego Zoo Wildlife Alliance in 2022 and was awarded Diplomat status by the American College of Veterinary Pathologists the same year. His role at Penn Vet is to provide diagnostic pathology services to local wildlife agencies, notably the Pennsylvania Game Commission, as well as assisting the domestic mammal pathology service at New Bolton Center. In addition to diagnostics, his research interests include improving the detection and recognition of infectious diseases in wildlife with an emphasis on emerging and parasitic diseases.


    Antonia Rotolo, MD, PhD, is a Research Assistant Professor in the Department of Pathobiology. She is an internist/hematologist oncologist with clinical expertise in hematopoietic stem cell transplants and over 10-years of research experience in invariant Natural Killer T (iNKT) cell biology and adoptive cell therapies. Dr. Rotolo received her PhD degree at Imperial College London, UK, and subsequently joined the University of Pennsylvania Center for Cellular Immunotherapies to pursue postdoctoral training in Chimeric Antigen Receptor (CAR) immunotherapies. She completed her postdoctoral training in the Mason lab, where she established the first translational canine model of CAR-iNKT cell therapy. Dr. Rotolo is currently a Research Assistant Professor within the Department of Pathobiology. Through comparative immuno-oncology, her studies focus on understanding the cellular and molecular mechanisms underpinning the iNKT paradox, i.e., the ability of iNKT cells to defend against cancer, pathogens and auto/allo-reactive cells by simultaneously suppressing and activating distinct immune subpopulations. Dr. Rotolo aims at leveraging iNKT natural properties to develop more effective, sustainable, and broadly accessible CAR immunotherapies.


    Holly Stewart, VMD, PhD, DACVS-LA, is an Assistant Professor of Large Animal Surgery in the Department of Clinical Studies—New Bolton Center. She received her veterinary degree in 2012 from the University of Pennsylvania School of Veterinary Medicine. She then did a rotating internship in equine medicine, surgery, and critical care at Pioneer Equine Hospital in Oakdale, California. Following her internship, Dr. Stewart returned to the University of Pennsylvania’s New Bolton Center for a residency in large animal surgery. After her residency, Dr. Stewart completed a PhD at Colorado State University under Dr. Christopher Kawcak. She then stayed as a postdoctoral fellow and research scientist at the Preclinical Surgical Research Laboratory under Dr. Jeremiah Easley at the Translational Medicine Institute at Colorado State University. In January 2023, she returned to New Bolton Center as an Assistant Professor of Large Animal Surgery in the Department of Clinical Studies. Her research is focused on understanding the relationship between subchondral bone and joint health. She is interested in the role of bone marrow lesions and has focused on the development of translational experimental models and optimization of volumetric imaging for the detection of changes within the subchondral bone.ine cognitive dysfunction.

    Honors & Achievements

    Dr. Susan W. Volk, Named Corinne R. and Henry Bower Professor of Surgery at Penn Vet

    Andrew M. Hoffman, DVM, DVSc, DACVIM, Gilbert S. Kahn Dean of the School of Veterinary Medicine at the University of Pennsylvania (Penn Vet) has named Susan W. Volk, VMD, PhD,…


    Dr. Jennifer Punt Named Distinguished Fellow of the American Association of Immunologists

    Jennifer Punt, VMD, PhD, was named a Distinguished Fellow of the American Association of Immunologists (AAI) on April 4, 2023. This program annually recognizes members for distinguished careers, outstanding scientific contributions, and their service to AAI and the immunology community. It honors active, long-term members (25 or more years) who have demonstrated one or more of the following: excellence in research accomplishment in the field of immunology; exceptional leadership to the immunology community in academia, foundations, nonprofits, industry, or government at a national or international level; notable distinction as an educator. 


    Four from Penn awarded Helen Keller Prize for Vision Research (link is external)

    Faculty from the School of Veterinary Medicine and Perelman School of Medicine were honored at the Association for Research in Vision and Ophthalmology meeting in New Orleans.


    Drs. Nicola Mason and Antonia Rotolo Receive 2023 Sebastian Strong Discovery Science Award

    Nicola Mason, BVetMed, PhD, and Antonia Rotolo, MD, PhD, are recipients of the 2023 Sebastian Strong Discovery Science Award. This award provides $500,000 to support their work to advance allogeneic, chimeric antigen receptor iNKT cells for the treatment of veterinary and pediatric patients with osteosarcoma.


    Dr. Andrew Modzelewski Receives Two Highly Competitive Awards

    Andrew Modezelewski, PhD, has received two prestigious and highly competitive awards. He has been named a Searle Scholar and also secured a Beckman Young Investigator Award. The Searle Scholars Program supports high risk, high reward research across a broad range of scientific disciplines. Each scholar receives an award of $300,000 in flexible funding to support his, her, or their work over the next three years. The Beckman Young Investigator Program (BYI) Program provides research support to the most promising young faculty members in the early stages of their academic careers in the chemical and life sciences, particularly to foster the invention of methods, instruments, and materials that will open new avenues of research in science.


    Dr. Kotaro Sasaki Receives Endocrine Society’s 2023 Early Investigator Award

    Kotaro Sasaki, MD, PhD, is one of five recipients to receive a 2023 Early Investigator Award from the Endocrine Society. These awards provide monetary support to assist in the development of early career investigators and recognition of their accomplishments in areas of general endocrinology.


    Dr. Gary Althouse Named Outstanding Academic of the Year

    Gary Althouse, DVM, PhD, is the 2023 recipient of the American Association of Swine Veterinarians’ Outstanding Swine Academic of the Year award. The award was presented during the association’s 54th Annual meeting in Aurora, Colorado. 


    Dr. Igor Brodsky Receives 2023 Nusbaum Student Mentoring Award

    Igor Brodsky, PhD, is the recipient of the 2023 Michael P. Nusbaum Graduate Student Mentoring Award, which is conferred by Biomedical Graduate Studies (BGS) at Penn. Mentors who receive this award embody the skills, experience, and wisdom essential to success in science; they serve as models for how one conducts his or her life in balance with a demanding career; and in acknowledgement that certain faculty play pivotal roles in guiding students in reaching their scholarly potential.

    Dr. Brodsky was praised by his mentees and colleagues for his personalized mentorship that is supportive and encouraging while providing a balance between intellectual freedom and guidance. Dr. Brodsky’s dedication to mentoring students and guiding them in reaching their scholarly potential perpetuate the mentoring values of Dr. Nusbaum within BGS.


    Dr. Nicola Mason Delivers Congressional Briefing to Raise Awareness of Translational Research

    Nicola Mason, BVetMed, PhD, was invited by FASEB-AAVMC to deliver a congressional briefing on April 19, 2023, to both the House and the Senate, to raise awareness about the value of companion animal research in advancing biomedical and veterinary research. Dr. Mason used this opportunity to represent the veterinary profession and champion the translational research that is performed at Penn and beyond, to advance human and veterinary health.

    Read More


    Dr. Daniel Beiting Hosts Inaugural GEMINI Educational Series

    The GEMINI series—organized jointly by Penn Vet’s Institute for Infectious and Zoonotic Diseases (IIZD) and Penn Medicine’s Institute for Immunology and Immune Health (I3H) group—is a series of one-day, hands-on, workshops geared toward teaching software and tools for advanced data analysis in GEnomics, MIcrobiology, aNImmunology. Three GEMINI workshops were held this Spring. One focused on using the R programming language and the ggplot2 software for creating publication-quality graphics. A second taught attendees how to connect analytic code to Adobe Illustrator to allow automated updating of complex, multi-panel figures for publication. A third workshop was hosted jointly with the Division of Clinical Diagnostics at CHOP and covered the UCSC Genome Browser. 

    The GEMINI Series was founded and is co-organized by Penn Vet’s Daniel Beiting, PhD, and PSOM’s Allie Greenplate, PhD, and is supported by Immune Health, the Institute for Immunology, and the IIZD.


    ULAR Team Places Third in the 2023 50K Schuylkill River Relay

    On April 22, 2023, the six-woman relay team of faculty and residents from ULAR (Team Name: Unforgettable Ladies Actively Running) was awarded third place for their finishing time in the 2023 50K Schuylkill River Relay that started near Phoenixville and went to Conshohocken and back again. The ULAR team wore animal-print socks to represent Penn Vet and all received a trophy (shown in the photo) for their impressive efforts. (L to R: Drs. Claire Hankenson, Blythe Philips, Natalie Fogarty (ULAR resident ’23), Kristin Gardiner, Lisa Hagan (ULAR resident ’23), and Matilda David (ULAR resident ’22)).


    Select Publications and Grants

    Read the latest scholarly publication and grant information from Penn Vet researchers.

    Bazant W, Blevins AS, Crouch K, and Beiting DP. Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes. Microbiome 2023;11:72. 
     
    Everest S, Linden AZ, Collier A, Verocai GG, Sobotyk C, and Samarani F. Reverse sneezing, unilateral epistaxis, and acute-onset seizures in a 9-year-old spayed female miniature Dachshund. J Am Vet Med Assoc 2023;261:1-4. 
     
    Guan F, You Y, Fay S, Adreance MA, McGoldrick LK, and Robinson MA. Factors affecting untargeted detection of doping agents in biological samples. Talanta 2023;258:124446. 
     
    Guan Y, Gao H, Leu NA, Vourekas A, Alexiou P, Maragkakis M, Kang Z, Mourelatos Z, Liang G, and Wang PJ. The MOV10 RNA helicase is a dosage-dependent host restriction factor for LINE1 retrotransposition in mice. PLoS Genet 2023;19:e1010566. 
     
    Guerin A, Strelau KM, Barylyuk K, Wallbank BA, Berry L, Crook OM, Lilley KS, Waller RF, and Striepen B. Cryptosporidium uses multiple distinct secretory organelles to interact with and modify its host cell. Cell Host Microbe 2023;31:650-664 e656. 
     
    Huerta Y, Lenz J, Flesner B, Abrams B, Amerman H, and Griffin M. Resolution of paraneoplastic hypoglycemia following nephroureterectomy for treatment of canine renal cell carcinoma: Case report. Front Vet Sci 2023;10:1134098. 
     
    Kuzi S, Mazaki-Tovi M, Hershkovitz S, Yas E, and Hess RS. Long-term field study of lispro and neutral protamine Hagedorn insulins treatment in dogs with diabetes mellitus. Vet Med Sci 2023;9:704-711. 
     
    Lenz JA, Benjamin SE, Walsh KA, Keuler NS, and Atherton MJ. Calculation of dose intensity and comparison of published methods using a cohort of canine T-cell lymphoma patients undergoing CHOP-based chemotherapy. Vet Comp Oncol 2023;21:339-348. 
     
    Liang J, Djurkovic MA, Shtanko O, and Harty RN. Chaperone-assisted selective autophagy targets filovirus VP40 as a client and restricts egress of virus particles. Proc Natl Acad Sci U S A 2023;120:e2210690120. 
     
    Liang J, Djurkovic MA, Shtanko O, and Harty RN. Chaperoning the driver of filovirus egress to a dead end. Autophagy 2023:1-2. 
     
    Lin H, Cossu IG, Leu NA, Deshpande AJ, Bernt KM, Luo M, and Wang PJ. The DOT1L-MLLT10 complex regulates male fertility and promotes histone removal during spermiogenesis. Development 2023;150. 
     
    Petrelli A, German AJ, O’Connell EM, and Silvestrini P. Serum insulin concentration in dogs with insulinoma as a clinical marker for presence of metastasis at the time of diagnosis. J Vet Intern Med 2023;37:1139-1145. 
     
    Pilling OA, Reis-Cunha JL, Grace CA, Berry ASF, Mitchell MW, Yu JA, Malekshahi CR, Krespan E, Go CK, Lombana C, Song YS, Amorim CF, Lago AS, Carvalho LP, Carvalho EM, Brisson D, Scott P, Jeffares DC, and Beiting DP. Selective whole-genome amplification reveals population genetics of Leishmania braziliensis directly from patient skin biopsies. PLoS Pathog2023;19:e1011230. 
     
    Ripolles-Garcia A, Murgiano L, Ziolkowska N, Marinho FP, Roszak K, Iffrig S, Aguirre GD, and Miyadera K. Natural disease history of a canine model of oligogenic RPGRIP1-cone-rod dystrophy establishes variable effects of previously and newly mapped modifier loci. Hum Mol Genet 2023;32:2139-2151. 
     
    Silvestrini P, Lloyd-Bradley B, Glanemann B, Barker EN, Badham H, Tappin S, Pascual M, Haines A, Mas A, Roura X, and Piviani M. Clinical presentation, diagnostic investigations, treatment protocols and outcomes of dogs diagnosed with tick-borne diseases living in the United Kingdom: 76 cases (2005-2019). J Small Anim Pract 2023;64:392-400. 
      
    Sorobetea D, Matsuda R, Peterson ST, Grayczyk JP, Rao I, Krespan E, Lanza M, Assenmacher CA, Mack M, Beiting DP, Radaelli E, and Brodsky IE. Inflammatory monocytes promote granuloma control of Yersinia infection. Nat Microbiol 2023;8:666-678.

    Takahashi K, Kwok JC, Sato Y, Aguirre GD, and Miyadera K. Extended functional rescue following AAV gene therapy in a canine model of LRIT3-congenital stationary night blindness. Vision Res 2023;209:108260.

    Michael L. Atchison
    NIH
    Short-term training: Students in health professional schools
    04/01/23—03/31/28
    $630,112
     
    Daniel P. Beiting
    URF 
    Identification of metagenomic and immunological determinants of disease severity in children from the Pneumonia Etiology Research for Child Health (PERCH) study
    03/01/23—02/29/24
    $74,989
     
    Daniel P. Beiting
    Ginkgo Bioworks 
    Out of thin air: Detecting animal pathogens through air sampling in a critical care environment
    03/13/23—09/12/23
    $2,417
     
    Christine L. Cain
    Morris Animal Foundation
    Fosmidomycin for treatment of canine otitis externa
    03/15/23—03/14/24
    $9,259
     
    Margret L. Casal
    National MPS Society, Inc.
    Odiparcil, substrate reduction therapy to treat MPS VI in a canine model mucopolysaccharidosis VI
    06/01/23—07/31/25
    $50,000
     
    Margret L. Casal
    Irish Wolfhound Foundation
    Elucidating gene variants contributing to idiopathic epilepsy in the Irish Wolfhound
    03/01/23—03/01/25
    $12,000
     
    Candice P. Chu 
    ITMAT/PICAB 
    Integrated renal and urinary single cell RNA sequencing in naturally occuring canine models of glomerular disease
    07/01/23—06/30/24
    $24,923
     
    Bruce D. Freedman
    NIH S10
    Leica Stellaris 8 Falcon/FLIM for the Penn Vet Imaging Core
    04/15/23—04/14/24
    $842,106
     
    Erin Gibson
    Vires Research Competition Award
    Randomized double-blinded evaluation of patient outcomes in dogs with hepatocellular carcinoma receiving embolization or chemoembolization
    02/1/2023—02/15/2024
    $20,000
     
    Maureen A. Griffin
    Vergent Bioscience
    Cathepsin-activated near-infrared imaging for intraoperative detection of canine oral squamous cell carcinomas
    03/10/23—03/10/24
    $18,250
     
    Ronald N. Harty
    NIH R21
    Role of host filamin proteins in regulating filovirus entry and egress
    03/10/23—02/28/25
    $324,000
     
    Christopher J. Lengner
    Children’s Hospital of Philadelphia (CHOP)
    Identification of novel genomic drivers of juvenile polyposis syndrome
    12/31/21—06/30/23
    $72,727
     
    James Marx 
    ASLAP Foundation 
    2023 ASLAP Foundation Summer Fellowship Program
    05/01/23—08/31/23
    $5,000
     
    Andrew J. Modzelewski
    Beckman Foundation
    Leveraging the phenomenon of retrotransposon reactivation in development to improve human health and treat disease
    09/01/23—08/31/27
    $15,000
     
    Lisa A. Murphy
    Department of Agriculture
    Regional veterinary workforce development to enhance early recognition of newly-detected, re-emerging, and foreign animal diseases
    06/01/23—05/31/25
    $95,932

    Fungai Musaigwa (Herbert Lab)
    American Association of Immunologists
    Perforin 2 expressing APC are responsible for unconventional cytokine release
    02/15/23—02/14/24
    $54,840

    Cynthia M. Otto
    APDT Foundation
    Amateur identification of heat-related illness in dogs
    5/26/2023—5/25/2024
    $2,471
     
    Julia Pascarella (Povelones Lab)
    Morris Animal Foundation
    Investigating the spatiotemporal role of cAMP signaling and related enzymes in the adhesion mechanism of Crithidia fasciculata
    06/01/23—09/01/23
    $5,500
     
    Phillip Scott
    NIH R13
    2023 Woods Hole Immunoparasitology Meeting
    03/01/23—02/29/24
    $7,000
     
    Charles H. Vite
    Kisbee Therapeutics
    Determine efficacy of Kisbee discs in feline NPC model (including dose response curve and dose interval of Kisbee discs)
    02/09/23—03/09/24
    $401,814
     
    P. Jeremy Wang
    NIH R01
    Epigenetic control of spermatogonial stem cell self-renewal
    06/05/23—03/31/28
    $1,275,078