In many autoimmune diseases, damage to the tissues is driven by the production of autoantibodies. The self-antigen targeted by these autoantibodies is known in canine diseases such as pemphigus foliaceous and vulgaris, myasthenia gravis, and masticatory myositis. Furthermore, autoantibodies against these antigens can be readily measured in the peripheral blood. Recent evidence in human medicine indicates that elimination of B cells and early plasmablasts using re-directed T cell therapy leads to elimination of B cells and early plasmablasts, loss of auto-reactive antibodies, and dramatic improvement in clinical signs and outcome. Interestingly, despite the return of B cells in the peripheral blood, disease remission appears to be maintained without the need for ongoing immunosuppressive therapy.